PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G271000.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 479aa    MW: 52898.1 Da    PI: 5.7291
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G271000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.51.3e-1311084771373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++++++c +av+++d  +++ l+++l +l+s +gdpmqRl ay++e++ arl++s+s lyk+l+++e +    se +++++l++e++P++
  Sevir.9G271000.2.p 108 LKQVIIACGKAVAENDVFATELLISELGQLVSVSGDPMQRLGAYMLEGIVARLSSSGSMLYKSLKCKEPT---GSELMSYMHLLYEICPFY 195
                         57899****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp +RiTg+++++s   +   l  +g+rL+++A+++g+pfefn+
  Sevir.9G271000.2.p 196 KFGYMSANGAIAEAIKGENFVHIIDFQIAQGSQWITLIQALAARPGGPPYIRITGIDDSNSAyaRGGGLDIVGRRLHSVAQSCGLPFEFNA 286
                         **********************************************************988899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v  + ++++le+L+v+pgE ++Vn+++qlh+++desvs+e++rd++++++ks++P+vv++veqe+++n+++F+ r +e+l+yy+a+f+s+
  Sevir.9G271000.2.p 287 -VPAASHEVQLEHLAVRPGEIIVVNFAYQLHHVPDESVSIENHRDRIIRMIKSINPRVVTLVEQESNTNTAPFFPRYMETLNYYTAMFESI 376
                         .7999************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++ lpr+++ r++ E+++++r+ivn++aceg er+erhe ++kW++r+ +aGF+p+pls+ +++++++llr ++s  y++ee++g l+lgW
  Sevir.9G271000.2.p 377 DVALPRDDRRRMSAEQHCVARDIVNLIACEGPERVERHELFGKWKARFAMAGFRPYPLSSVVNNTINTLLRSYNSC-YSLEERDGVLYLGW 466
                         **************************************************************************55.************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r Lv+ SaW
  Sevir.9G271000.2.p 467 KNRVLVVSSAW 477
                         *********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.99282459IPR005202Transcription factor GRAS
PfamPF035144.4E-129108477IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MYCTLESSSA NGIYPAQSST SSHSISPLSG SPLSQHDGHS DHTYSSPPSA SCLTEVADLQ  60
IKLKELENVI LGPELDITSD SPESFLQANV QLRPDNWRQL LGIDAGDLKQ VIIACGKAVA  120
ENDVFATELL ISELGQLVSV SGDPMQRLGA YMLEGIVARL SSSGSMLYKS LKCKEPTGSE  180
LMSYMHLLYE ICPFYKFGYM SANGAIAEAI KGENFVHIID FQIAQGSQWI TLIQALAARP  240
GGPPYIRITG IDDSNSAYAR GGGLDIVGRR LHSVAQSCGL PFEFNAVPAA SHEVQLEHLA  300
VRPGEIIVVN FAYQLHHVPD ESVSIENHRD RIIRMIKSIN PRVVTLVEQE SNTNTAPFFP  360
RYMETLNYYT AMFESIDVAL PRDDRRRMSA EQHCVARDIV NLIACEGPER VERHELFGKW  420
KARFAMAGFR PYPLSSVVNN TINTLLRSYN SCYSLEERDG VLYLGWKNRV LVVSSAWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-591104776374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587660.0HQ858766.1 Zea mays clone UT1682 GRAS transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983228.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_004983229.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLK4A9B30.0K4A9B3_SETIT; Uncharacterized protein
STRINGSi035052m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein